JP,
I have found that if I replace the over powder wad with "3 to 4" over-shot cards helped my smoothbore shoot better patterns (also means one less component to fumble with in the field). I feel that if anything behind the shot column is heavier then that object can over take the shot and punch a hole in it.
I have also made "paper shot cups". Using the 3x5 cards in magazines, I roll up a tube like a "coin tube", fold one end closed pour in the shot, fold the end, and just slide it down the barrel. I know shooters who use post-it notes, brown paper bags, parchment paper, etc. Made properly the packet will tear on ignition, hold the shot togeather as it runs the length of the barrel and fall off about 10-15 feet in front of you. As with most things, there are those who couldn't get the shot packet to work for them. It couldn't hurt to try.
You could also try using nickel plated shot or bismuth. Being harder more will stay round and not deform as easily as lead. This will help to eliminate the fliers (by the way fliers can help with skeet and sporting clays!!!).
Jug choking will also provide you with an internal choke and depending on barrrel thickness you can choke all the way to what would be considered a full choke.
When it is all said and done, you will not get the range and performance of the newer modern shot shells, but I bet I have a higher shot the harvest ratio for my hunting seasons (waterfowl, upand game, and turkey) than the average hunter.