Depending on your load it could mean a significant increase. I would back off at least .010" from your reading and go from there.
The 3.250" length is a standard, but not etched in stone.
One thing to remember is that the Encore is not a bolt action. It might be great for factory load replications, but it might not handle much more pressure than that. You will most likly find your best accuracy / velocity combo, somewhere between .010 and .030" off th lands.