As I understand it, (and I claim to have little knowledge of this subject, so if I'm mistaken please correct me) Berdan primers are at least mildly corrosive, whereas Boxer primers are non-corrosive.
Given a choice, for a civilian-manufactured rifle, is there a reason to stay away from Berdan? I am leery of the corrosive nature of the primers - the concern being a result of using some berdan-primed Russian cheapo 5.56mm in a Ruger Mini-14 and having the firing pin break on me twice. After the 2nd breakdown, I sent the rifle and the spent cartridges I was using back to Ruger. They told me to stop using the ammo I was using and I'd stop having problems - and they were right. It may be mildly annoying, but ever since I started using US-manufacture boxer-primed non-corrosive stuff exclusively, I haven't had a problem at all.
These days, my objective is trying to find myself some decent .30-06 ammunition that won't cost me ~$1+ a round, but also won't give me trouble with busted firing pins. While I've never busted a firing pin in anything else, I'm not looking to start. I don't shoot enough .30-06 (or anything, really) to warrant re-loading, in my opinion. The day may come though that I start loading my own, especially if .30-06 rounds are going to keep getting more expensive.
Feel free to include any caveats about military-surplus rifles as well pertaining to Berdan primers. While I don't own one now, a Garand is on my short list, and I'm sure I won't want to bust it. Since a lot (most?) of mil-surp ammo seems to be Berdan-primed, I'm guessing the military rifles stood up to the corrosion better, or maybe the military just didn't care, I don't know. Lowest bidder and all that, after all. I understand that the benefit of Berdan is basically that it's more reliable in combat conditions, but mercifully that isn't a concern for me.
Thanks very much.