Actually,
I owe you a better answer. After Triple 7 came out, and then Triple 7 pellets about a year ago-- I asked Thompson repeatedly what their position was appertaining to Encores and Omegas, as "other manufacturers" had already allowed 150 grain loads of Triple 7 pellets, before they were on the market. Thompson's answer was "100 grains max., just like Hodgdon says."
They have stuck to that so far, and the reason is simply they have not personally tested Triple 7 with all of their recommended loads-- which is quite an undertaking. Rather than just allow heavier loads with one or two projectiles, they stated that they have to do it all, and "when they done, they are done."
Certainly, their Encore is one of the strongest muzzleloaders on the market, that much is clear. Rather then just make a casual statement that XXX grains of Triple 7 is allowed, they have elected to shoot them all, and test them all first. I applaud them for their restraint. It is not plausible that "other" muzzleloading companies could have actually tested Triple 7 pellets before its release with all possible projectile combinations. So-- they were guessing. Thompson does not care to just guess.