I think gas piston is definitely the future of the AR platform, particularly when talking specifically about military applications. That certainly doesn't mean there's no merit to the original direct impingement system, either. I think this choice should boil down to your personal preference and shooting style. If you intend to do a lot of high volume shooting, you might benefit from the gas piston system. Any more, I rarely shoot more than 1k rounds through my target/coyote hunting AR and it doesn't get too dirty - even though it usually only gets cleaned 2 or 3 times a year.
I cant imagine accuracy being a big issue either, unless the weight of moving parts in the gas piston system has an effect. Even if it does, it should be negligible. Personally, if I was building a new AR, I'd probably go with a gas piston system just to try something new - especially if I was building a tactical/personal defense rifle.