Maybe a no brainer for some folks, but before there was factory brass available for the Whelen, it was popular and the accepted practice to form from surplus military brass by just sizing.
If it works, why make it complicated. Try it both ways, before and after the case is fireformed and see if there is an substantial difference in accuracy. I bet you won't notice any.
And concerning the waste of powder and bullets, the cost of a primer, 10 grains of Red Dot and a cast lead pistol bullet is far less than the cost of a factory case.
On military cases, there is often no specification for the cartridge, only the arsnel and date. It is pretty difficult to mistake a '06 for a Whelen even if they are not standing side by side.