Mac is exactly right, that's why the instructions indicate approx 1/8", each rifle is different, some may be more, some less. I have many frames and barrels, not a one of em is identical to another, but they're all real close, not too many have more than 1/8", but some do, just depends on the latch shelf and and the latch itself.
I'm sure that with a little forethought, you should be able to fix the latch shelf. I theorized about this when working the shelf, thought about using a shim epoxied to the shelf, then take it down just like the pivot work. Fred has a lot about the latch shelf on his web site, maybe now would be a good time to check it out and make the modifications that he has done to make the geometry of the latch and shelf more compatible.