Any measurements on your primer pockets? I have found signifigant differences between manufacturers, within lots and combine this with primer manufacturing differences the tolerances stack up fast. WInchester primers as I remember are taller in cup height. CCI were about 0.005" - 0.008" shorter combine that with a deep pocket and lots of click, little bang.
Had an issue with Starline brass .45-70Govt having deep pockets, and Winchester primers fixed 90% of it, other 10% primer pockets were just too deep.
Just my $0.02