When I was a poor college student I went nutso in buying and collecting Type 38 and Type 99 rifles. Had 10 of them, as well as accessories and bayonets. I had to handload for them using the NORMA brass that was available due to cost, did alot of shooting with those guns. I have also shot some of the military surplus ammo too, that is hotter stuff than the sporting loads, but I found it to be very accurate.
When ever I bought a new Arisaka I would check it very carefully, and then fire a first shot with my face and upper body pulled as far away as possible from the gun, bench it and site it down range initially. Then check the condition of the fired case and the gun again. I Did not have any problems, as the action is notoriously strong, I felt it was a good first handloaders gun in case I made any mistakes.
I did have an early Type 99 that had what is called a "duffle bag cut" on the stock. This rifle seemed ok when I bought it, but when it was fired the stock came loose up front, and slid forward. The stock had been intentionally cut with a saw to get the unit into a duffle bag for the trip home by the receiving GI. You could not see the cut through the wood as the forward sling mount hid this. It had been an estate purchase, and the owner obviously had not shot it since 1945. I tried various glues, which did not work. If you get one with this condition, you could restock it, which is what I did, or ask a gunsmith for help.
I have heard of people having problems with these rifles, but the stories are very rare, and I have not been able to verify any of them. The real late war guns had some softer steel used, but as a collector I never was able to find one to purchase for my collection. Most of the type 99s available seem to be from 1942-1944 period. I had a later model that was real budget, rough machined, welded peep site, covered with tool marks, no cleaning rod, wooden butt plate, etc, this gun was in new condition mechanically, and the first 150 rounds the inside chamber had a rough spot that would scratch my brass, and you had to wiggle the bolt 2-3 times to chamber a cartridge, but eventually it all worked itself smooth during the break in period.