Just so you know where I am coming from, I both have a TIG welder and know how to TIG weld and I TIG weld all of the trunnions I do unless there is a welding problem with the material used for the barrel and trunnions. In such a case, I will silicon bronze braze instead.
Whether your system would work depends on the properties of
JB Weld and the amount of recoil force your gun generates. The recoil force will tend to rotate the trunnions about the front of the pocket so the anchoring (weld, etc.) in the rear will be carrying most of the load. While it is unclear how much "tensile lap shear" applies in this case, it would appear that just gluing the trunnion in would give as much strength as making a "keystone" would. Since the depth of the pocket for the trunnion is going to determine how much glue you can get in action, I can't seeing JB Weld as providing much strength.
The carriage is going to have a tendency to keep the trunnions in the barrel, especially if the pocket has perpendicular sides. But I would be unwilling to rely on a wood carriage to perform that function.
JB Weld Properties
Properties . . . . . . . . (psi)
Tensile Strength: . . . 3960
Adhesion: . . . . . . . . 1800
Flex Strength: . . . . . 7320
Tensile Lap Shear: . . 1040
Shrinkage: . . . . . . . . 0.0%
Resistant to: . . . . . . 500° F