Siskiyou, this is not uncommon at all. The availability of inexpensive chronographs has been a real eye opener to shooters everwhere. It is a fact of life that there are fast barrels & slow barrels, even with 2 rifles that
are just alike. I see this alot because me & one of my brothers buy
the same cal.& model of rifle & work up a good load for both rifles when possible, sometimes we have to still develope a load for each rifle, as 1 rifle will like 1 load but not another. We have 2 identical 25-06's that had a vel. difference of 80fps with the same load & no there is nothing wrong with either rifle. I have heard of more difference than that with other rifles.
Some might assume that the faster barrel may be more accurate because
perhaps the bore is slicker, less burrs, etc. but this is not allways true. There are other factors such as the crown, how precise was the chamber cut, just too many factors to mention.
50FPS difference is not a big deal, especially since you are aware of it. Take the rifle that groups your desired hunting load the best & the one that
you can shoot the best from field positions, hopefully it will be the same
rifle.