As I alluded to in a previous reply, the dioxin project I’m working on also includes a 5-year study of Great Horned Owls in the river’s floodplain. The study revolves around the placement of artificial nests inorder to bring in breeding pairs so that the young can be studied by blood samples, pellet collection, telemetry, etc,
I emailed the pre-doctorate, grad student that heads up the owl study and ask her quote- “When you were analyzing the owl pellets, could you ascertain the % of muskrat in their diets?” Her reply quote- “Last year muskrats accounted for 0% of the owls' diets. Weird, huh? Not a single muskrat. This year the muskrats will contribute a large percentage, but we won't know that percentage for quite a long time. We are still feathers and fur from bones. Analysis won't start until that process is finished. I'll let you know the final tally, though!”
Knowing there’s about a years’ lag in sample work, this lack of muskrat could be due to the few active nest she had that year. Last year she had 11-13 active nests which could be what she alluded to by stating she was going to find more evidence of muskrat in the diets. As soon as the female starts setting on the eggs, the students make weekly collections of the pellets beneath the nest tree until the chicks fledge.