Bullseye isn't wrong, those fine threads are hard to clean. I use a miniature screwdriver set that's hollowground, one of the smaller ones will reach inside the hole to scrape the bottom. A Q-tip with 1/2 of the cotton ripped off will fill the little hole, add solvent and voila, a thread cleaner. If bore solvent doesn't take it out, use rubbing alcohol to dry it up and take a look under a really bright light. Some sight screws are shorter than others and I have ran into mounting holes not being deep enough before. Sometimes it takes 3 or 4 tries to get them cleaned up, lots of my tore up Q-tips. Patience wins mostly. I had to dig in my jar of sight parts the other day to find screws that didn't bottom out so, you're not the only one.