Might look for a parasitic load that draining down the battery overnight.
Check door jamb switches, door and window controls, seat, lighting, dome light will kill a battery faster than anything, check those small cube relays mabe one is stuck on powering some unseen circuit you arnt aware of, kinda like leaving the ignition switch on in Acc in the old days.
Might just pull a fuse each night till you isolate the problem group of circuits.
I have have some friends, ther F150 had cronic winter dead battery, finally figured it was a door jamb switch they have to slamb the door really hard in the winter to get it to shut off, they in the end just pulled out the dome light bulb instead of paying a shop $110/hr to trouble shoot the problem.