Well your velocity issue is part of the horizontal too, velocity effects rotation as well as forword momentum and Two other things;
*The bullet/bore contact areas, and profile of the bullets in question are different.
(sectional density(?)) These things can effect the barrel harmonics and recoil.
*Different alloy`s are used by each manufacturer, each has it's own drag ratio.
Suffice to say what your seeing is typical. It's hard to get two different bullets by the same maker to fly the same let alone two different brands.
The Sierra Match King and Game king as example, they try to say the bullets are similar enough to hold the same groups,, I haven't seen it in my experiance with those two in two different guns and calibers.