Well that is factually wrong. I am a very senior Navy Chaplain and that article is a perversion of the truth. I have two requests in right now, I also teach at the senior officer courses and literally this week have lead about 100 of them through the process (commanding officers and executive officers) and our Chief of Chaplains RADM Scott (who is not a liberal by any stretch of the imagination if you've ever heard him preach) spoke to my students this week on that very issue.
Here's the law:
https://www.mynavyhr.navy.mil/Portals/55/Reference/MILPERSMAN/1000/1700Morale/1730-020%20.pdf?ver=c6WJ56qzUXFwgnPmAAx6-w%3D%3D It wasn't "obtained" ... its been hanging out right there not even behind a log in, for as long as the Navy has had internet.
Chaplains do not approve or deny any claim. They simply interview the person requesting religious exemption. And under the RFRA, the request only has to claim its a sincerely held belief - no theological justification required. The requester also must be counseled by Medical Officer, who also cannot approve or deny the claim. Then it goes to the Commanding Officer, who can only recommend or not recommend the request. And that gets routed all the way to N131 at the Pentagon who is final authority to approve or deny.
CO stands for Commanding Officer, which the Author appears not to understand. Its like they didn't even read the document they posted. And nowhere in the document do they substantiate the title - the alleged officer doesn't blame the Chaplain for blocking the request. The author injected their left wing spin into the document without justification.
Here's some facts: requesting an RE for immunization has never been automatically approved, ever, in decades. The Anthrax debacle was identical to this. A request is a request, and while awaiting a determination from N131 ... way above anyone's pay grade ... the individual requester can be forced to engage in the very activity they request a waiver from. And if they disobey, they can be punished.
However, historically, commands do not want to "punish" people, but they cannot use them if the mission requirements now include fully medical ready. So the requester should not expect an automatic pass, nor to be able to continue to serve with a waiver. All requests will most likely be denied by N131, but the requesters will most likely be administrative separated, allowed to retire, or resign their commissions, if they've met their obligated service. If they act like a jack ass, the command will most likely escalate to match.
The guys I'm helping through the process now I'm advising to be respectful. And my student COs and XOs I'm advising to keep their emotions in check. None of them wants to punish anyone or make it worse than it is. It sucks all around.