Those scratches are not from the bullet. Bullets travel paralell to the rifling, and are spinning the exact same as the twist in the bore as they are still locked into the rifling while in the bore. Tooling used to ream the bore would be a possibility but those would only exist if it were cut/broach rifled, NEF's aren't. Both hammer rifle and button rifling may leave scratches but they would not be perpendicular to both the rifling and on both lands and grooves. What equipment are you using to clean this rifle? Perhap that's where the scratches came from. The other possiblility is an improperly used pilot on a boresighter... In any case if it's not causing a problem, ignore them. If the become more numerous, find where they are coming from!!