The method for slugging a bore chamges if you plan to shoot blackpowder. BP guns need to be slugged from the chamber end. A lead ball, or bullet is driven in just far enough to get a measurement of the forcing cone. It is the area between the bore and chamber that is utmost important for BP cartridges. This "ramp" area of the forcing cone is measured halfway between the chamber and the bore, and that is your bullet size for BP.
I generally don't push a slug all the way through a bore for smokeless either. I drive it into the muzzle an inch or so, and then try another at the breech end about the same distance. I then measure both, and go with the larger of the two.
I built a miniature slide hammer setup that I can put different sized lead balls onto. I then slide hammer them into each end, and slide hammer them back out. Then I can measure them. This setup allows me to tighten down on the lead ball, and expand it, so I can use it over again.