The heavier cases, which are giving you more velocity, have thicker case walls. With the same powder charge as the other cases, you are getting more velocity because the thicker case walls of the Federal cases result in higher pressure. Smaller combustion chamber area with a given load=higher pressure. If you measure and weight the water volume of the various cases you are using, you will be able to see the difference.
This is neither good nor bad, just stick to one brand of case for that rifle. All cases are not the same, and there are manufacturing differences within the same make of case. Some handloaders go so far as to weight their cases, and sort them out according to weight. Unless you are after a benchrest level of accuracy, that really isn't necessary.
So now you know! Good shooting to you, and be careful out there!