Are you still using the factory front sight? Don't know why you put an adjustable sight on you nightstand gun, but the Glock adjustable sight would be my last choice. I would suggest you invest less than $100 for a good set of night sights. I can't think of anything in a Glock internally that could cause you this problem, expecially one that has been used so little. If you're set on keeping the sight you have, you can get shorter front sights from Glock to bring your POI up a bit.
Good Luck!
Savage